...sequence-structure alignment, integer programming, dynamic programming, Lagrangian relaxation and duality, s[gap=233]关键词：蛋白质线程，蛋白质结构预测，序列结构对齐，整数规划，动态规划，拉格朗日松弛和对偶，梯度优化。
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RNA sequence-structure alignment is a basic problem in bioinformatics.
RNA序列结构比对是生物信息学中的基本问题。
This process is composed of such sections as recognition of target template, alignment between query sequence and target sequence, modeling, evaluation of structure rationality.
这个过程包括以下几个部分：目标模板的识别、查询序列和目标序列的排列、构建模型和模型的结构合理性评估。
The biological sequence analysis research content mainly includes the sequence alignment, the protein structure prediction, and the genome sequence analysis etc.
生物序列分析的主要研究内容包括序列比对、蛋白质结构预测、基因组序列分析等。
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