They were flown ahead of a parade to mark 100 years since the foundation of the UlsterVolunteerForce(UVF), but, despite assurances from organisers, the flags have not been taken down.
She said the Police Service of Northern Ireland's Chief Constable Matt Baggott believed senior members of the UlsterVolunteerForce(UVF) had been involved in orchestrating the violence, but without the authority of the group's leadership.