The Vulcan to the Sky Trust said it decided not to fund the repairs.
The Vulcan was restored over a 15-year period in Bruntingthorpe but RAF Waddington was its home when it was operational.
Pub regulars said they were disappointed the Vulcan was being demolished but liked the idea of preserving the pub at the museum.
In May, Doncaster Robin Hood Airport was forced to close temporarily after the Vulcan bomber aborted take-off due to an engine fault.
The Vulcan made its maiden flight in 1952 before acting as a deterrent during the Cold War and seeing active service in the Falklands War.
The Vulcan XH558 took its first flight on 25 May 1960 and was originally built to carry nuclear weapons but was only ever used as a nuclear deterrent.
As well as the RAF Waddington show, the Vulcan has been given the green light to take part in the Royal International Air Tattoo in Fairford, Gloucestershire, and the Farnborough airshow in Hampshire.
The Vulcan Flipstart is one of those products that just gets you juiced up about gadgets, because really, what's more gadgety than a full-fledged computer that you can slide into a coat pocket?
ENGADGET: Hands-on with Vulcan's Flipstart handheld PC Hands-on
The last Vulcan was withdrawn from service in 1984, but the XH558 flew on from 1986 to 1993 as the single RAF display Vulcan.
The iconic Vulcan aircraft has gone on display to the public at Robin Hood Airport Doncaster Sheffield.
Spock, in the film, retains the traits of the archetypal Vulcan, adhering to logic with every conclusion and inference, governing his emotional impulses with stoic alignment and unwilling to break even the most minute rule.
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The last airworthy Vulcan bomber will fly for the final time next year, the trust which funds the aircraft has confirmed.
Star Trek actor William Shatner, who portrayed the Enterprise's captain James Kirk, had previously called on the vote organisers to add Vulcan and Romulus to the list of names in contention.
As we reported last month, an object surprisingly similar to an astronomical wild-goose from the 19th century, the mythic planet Vulcan, was found orbiting a star dubbed Kepler 10.
However, Mr Shatner appeared pleased that Vulcan made the list, tweeting: "I think we are over 100k votes for Vulcan on PlutoRocks.com that's wonderful!"
The train's star attraction is the stately, 81-ton Vulcan 15, built in 1954 and one of the world's few surviving steam engines.
He pointed specifically to projects in Alabama that have received federal monies: a ferry in Gee's Bend that restarted service in 2006, and a 56-foot-tall cast-iron statue of Vulcan, the Roman god of the fire and forge, in Birmingham.
Star Trek fans have something to rejoice in: "Vulcan" is the leading contender in a vote to name two of Pluto's recently discovered moons.
Looming over the emerging South Lake neighborhood's future is uncertainty over its residential component as Vulcan prepares to deliver more condominiums in the next 18 months.
The mission was written about in a bestselling book, Vulcan 607, by Roland White and is an example of why the Vulcans are so popular.
It seems to have been inspired by the LID (Low-Power Interactive Display) on the promising but still unshipped miniature Vulcan FlipStart PC.
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What makes it tougher is that unlike newsletters, which collect subscription money in advance and then pay the printer's bills over the course of a year, Vulcan pays for printing upfront and then collects from advertisers and distributors.
To me, it sounds like the British triphoppers Portishead did a musical Vulcan mind meld with Richard and Karen Carpenter.
Enthusiasts raised enough money to save the world's last remaining flying Vulcan bomber just days before it was due to be grounded.
Their first encounters must have been something like you or me running into a Vulcan just beamed down to the local strip mall.
In late 2012 his Vulcan Real Estate sold to Amazon the 12-building campus the online retailer had been leasing in downtown Seattle.
The majority of analysts think investors should stand pat on Vulcan, with eight of 13 analysts rating it hold.
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