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However, Mark Fry, joint administrator of SLH, insisted he was "shocked and extremely disappointed" with the League's decision to deduct points.
BBC: Penalised Saints face relegation
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But a League investigation by "independent forensic accountants" found that the football club and SLH were "inextricably linked as one economic entity" and applied their mandatory penalty.
BBC: Penalised Saints face relegation
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Chief executive Rupert Lowe, Saints chairman Michael Wilde and director Andrew Cowen resigned from the company last week, although a statement from SLH said the club was "unaffected by these insolvency proceedings".
BBC: Southampton await League inquiry
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Saints' parent company Southampton Leisure Holdings plc (SLH) has been in administration since April, and Saints had hoped to avoid a points deduction as SLH was in administration - not the club.
BBC: Pinnacle pulls out of Saints bid
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The south coast outfit had hoped to avoid the punishment as they argued that it was their parent company Southampton Leisure Holdings plc (SLH) which had gone into administration on 2 April - not the football club.
BBC: Penalised Saints face relegation
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But a League investigation by "independent forensic accountants" found that the football club and SLH were "inextricably linked as one economic entity" and applied its mandatory 10-point penalty, which will apply from the start of next season in League One.
BBC: Pinnacle pulls out of Saints bid