Harmison's return follows his successful recall to the Test side earlier this month.
South Africa produced another impressive display in the field on the opening day, with Andre Nel taking three wickets on his Test recall.
Shah struggled to make an impact during the one-day series as England slipped to a 3-1 defeat and knew he needed runs to stand any chance of a Test recall.
They may, however, decide to give Vaughan more time in county cricket before considering a recall to the Test side for the four-match series against Pakistan which starts in the middle of next month.
BBC: SPORT | Cricket | England | Vaughan refuses to hurry comeback
Flintoff, who hopes for a recall for the second Test, took 2-37 in two lively spells totalling 11 overs.
Giles's match haul of 12 for 216 increased his chances of an England recall for the Headingley Test, and streteched his side's unbeaten run in the Championship to 10 matches.
Azhar Ali was run out for 19 while Yasir Hameed, who last played a Test in 2007 and is pushing for a recall for next week's third Test, made 27.
Pace Bowler Jermaine Lawson celebrated his recall to the West Indies Test squad by having Ashraful caught by Smith and he also cleaned up Tapash Baisya for a duck to finish with figures of 3-42.
Strauss virtually assured himself of a recall for next week's first Test in Hamilton with a patient display over four and a half hours.
Jenkins, Wales' most capped hooker with 39 Test appearances, earns a deserved recall, while Evans starts an international for the first time after going on as a second-half substitute against South Africa last November.
Flintoff is hoping for a recall to the England side for their second Test against South Africa, which begins on 18 July at Headingley, and will be disappointed he missed the chance to impress.
Another failed breath test follows and the decision is taken to recall him to prison.
But critics say that the test's emphasis on memorization, fact recall and processing speed can determine college admissions too arbitrarily.
The Johannesburg-born player, who has won 35 caps for South Africa, and four other European-based players were given a surprise recall by Springbok coach Peter de Villiers for Saturday's Test in Cardiff, as players based overseas have been overlooked in the past.
The slow left-armer, omitted from England team that drew with India in the second Test at Trent Bridge, staked his claim for a recall at Headingley next week.
Pietersen spoke of his delight at Broad's recall after the 22-year-old was left out for the third Test after struggling with the ball in the first two Tests.
For those who may not recall (were you born after 1975?), the Pepsi Challenge originally took the form of a blind taste test.
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