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Russia, which still commands 25, 000 border troops in the region, shares Mr Rakhmonov's fears.
ECONOMIST: The battle for Afghanistan
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Recent elections, criticised by international observers, strengthened the party of the president, Imomali Rakhmonov.
ECONOMIST: A proliferation of revolutions
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Reducing poverty and solving such problems are primary goals for Mr Rakhmonov's government.
ECONOMIST: Tajiks need peace in Afghanistan
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The Tajik president, Imamali Rakhmonov, called an emergency meeting after the fall of Mazar to discuss events to the south.
ECONOMIST: The battle for Afghanistan
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This time it is not between the mainly Islamic United Tajik Opposition and the 20, 000-strong Russian peacekeeping force that has kept President Imamali Rakhmonov in power.
ECONOMIST: Tajikistan
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This month, the brother of a leading politician was sentenced to death for, it was alleged, taking part in a grenade attack on Mr Rakhmonov's motorcade.
ECONOMIST: Tajikistan
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From Tajikistan's President Imomali Rakhmonov, with his celebration of Tajikistan's Aryan, pre-Islamic past, to Uzbekistan's adoption of Tamerlane as the nation's founder (even though he was not an Uzbek), these efforts have proved divisive.
ECONOMIST: Central Asia's five stans
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To negotiate a peace with Mr Nuri, Mr Rakhmonov has had to take into account the views of Russia, his anti-Islamist parliament and half a dozen warlords with their own fiefs and their own ambitions.
ECONOMIST: Tajikistan