Karzai summoned Abdul Qadir Fitrat, the governor of the Central Bank, to the palace.
Shaukat Qadir, who taught many senior Pakistani generals at the country's National Defence University.
However, rescuing Mr. Musharraf is this way would be "extremely embarrassing" for the military, Mr. Qadir said.
Still others suspect that Mr Qadir was the subject of a power struggle within the Northern Alliance.
Whatever the motivation of Mr Qadir's killer, his assassination threatens to destabilise a fragile peace in Afghanistan.
In Operation Pamir, Col Qadir deployed short-range mortars and Russian-made D30 guns, which have a range of several kilometres.
The overall commander of the operation, Colonel Abdul Qadir, said that development was essential, but security had to come first.
If Brig Qadir's information is correct, then that explains why Dr Afridi was not in any particular hurry to leave Pakistan.
BBC: Was 'Bin Laden doctor' Shakil Afridi an unsuspecting pawn?
Nangarhar, which Mr Qadir governed in the mid-1990s, is one of Afghanistan's most important areas for the cultivation of opium-producing poppies.
The caretaker government should avoid controversial matters that are not reversible by the winner of the May 11 parliamentary election, Qadir said.
Iraqi Defense Minister Abdul Qadir Mohammed Jasim signed the agreements on Tuesday with UK Ambassador Christopher Prentice and Australian ambassador Robert Tyson.
For the army, there is one theoretical option that could save Mr. Musharraf from the courts, said Mr. Qadir, the retired brigadier general.
At least 146 people were also wounded in the explosion and 32 of them remain in serious condition, said Pakistani surgeon, Jalil Qadir.
But after Mr Qadir's death some may feel that they are safer back home, where they can be protected by their own men.
But the list of those who may wish to do that, or who had reason to hold a grudge against Mr Qadir, is a long one.
Quoting Inter Service Intelligence (ISI) officials privy to Dr Afridi's interrogation, Brig Qadir suggests he probably did not know he was helping the Americans track down Bin Laden.
BBC: Was 'Bin Laden doctor' Shakil Afridi an unsuspecting pawn?
Mr Qadir, though belonging to the Pushtun majority that ruled Afghanistan for generations, had strong ties with the powerful Northern Alliance which fought the Taliban to the end.
In Kirkuk, 250km (150 miles) north of Baghdad, four bombs were planted near the house of a military officer, the city's police commander, Brig Gen Sarhad Qadir, told AP.
Dr Afridi did not know who the target of the operation was when the CIA recruited him, according to a private investigation carried out by retired Pakistani Brig Shaukat Qadir.
Attorney General Irfan Qadir submitted a statement to the Supreme Court on Monday, saying caretaker officials have decided not to file treason charges because it was not part of their mandate.
One rival for power there, Haji Zaman, was forced to flee to Peshawar in bordering Pakistan two months ago after being bested in a power struggle by Mr Qadir and Hazrat Ali, Ningrahar's military commander.
Mansha's beliefs are reinforced in talks with Raja's spiritual teacher Sheikh Aleey Qadir, a Malaysian cleric in east London from a school of Islamic learning that traces its lineage of learning directly to the Prophet Mohammed.
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