"There will be some changes, of players and of tactics, " Pua told El Observador newspaper.
BBC: Uruguay forced into changes
Pua kept silent when the players wanted him to rush to their defence.
BBC: Pua in for the long haul
Uruguay coach Victor Pua is planning changes of personnel and tactics for their decisive clash with France on Thursday.
Hovering over this stand-off is the prospect of an election, which Mr Thaksin's Pua Thai party reckons it can win.
ECONOMIST: Thaksin still hankers after a triumphant homecoming
With his off the field problems sorted out, Pua can now concentrate his efforts on preparing the team for their World Cup return.
The journalist who made the accusations was thought to be close to Pua - some even saw Pua as the source for the stories.
Pua did not confirm the changes he plans, but is expected to replace midfielder Gustavo Varela with Marcelo Romero, and Guigou with Fabian O'Neill.
If his team give a good account of themselves this June then surely no one will be able to doubt the contribution of Victor Pua.
Pua weathered the storm, and decided to stay on.
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