Egypt's Mena news agency reports that the army has already begun sealing them off.
And the state-run MENA news agency reported two of the those killed Monday were army conscripts.
The Egyptian government has requested more security at the church, Egypt's Mena news agency reported.
Egypt's prime minister is to chair a cabinet meeting on Wednesday to discuss the situation, the Mena news agency said.
BBC: Egypt crisis: Protesters maintain Mursi decree defiance
The official Mena news agency said Mr Maher's passport was confiscated and he was ordered to be detained for four days.
In Mahalla, petrol bombs were thrown at the Islamist office, setting the building on fire, the state-run Mena news agency reported.
The judge also said that others facing charges should also be retried, including six interior ministry deputies, the state-run MENA news agency said.
Mekki said he resigned last month, but stayed on because he had to tend to a number of important issues, including the controversy over the new constitution, according to his resignation letter published by the state-run MENA news agency.
In addition, six Mubarak aides will also return to the dock, the Mena state news agency reported.
Mr. Ganzouri convened an emergency cabinet meeting Friday to discuss the situation, according to MENA, the state news agency.
The damaged cable caused a drop in the speed of online services in Egypt and some other countries, said Egyptian news agency Mena.
His comments come after Egyptian state news agency MENA reported that parliament Speaker Mohamed Al Katatney called for lawmakers to hold a public meeting Tuesday.
Earlier, state news agency Mena reported six deaths in Port Said during daylight hours on Monday, when funerals were held for three people killed on Sunday.
Egypt's Deputy Foreign Minister for African Affairs, Ali Hifni, said that the diversion of the river was not something to worry about, according to the Egyptian state-run news agency Mena.
Egypt's state news agency Mena reported that the Egyptian Foreign Minister Ahmed Aboul Gheit was monitoring Mr Mwanawasa's treatment in Sharm el-Sheikh, and that President Hosni Mubarak had visited him in hospital.
According to a report by Egypt's official news agency, Mena, Mr Morsi - currently in Qatar for a meeting of the Arab League - now estimates the polls will be held as late as October.
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