Braga held the Reds to a goalless draw at Anfield after winning the first leg 1-0 in Portugal.
Boss Ferguson saw United win their home leg 1-0 but they squandered chances to make the scoreline more convincing.
The Reds conceded an injury-time own goal by John Arne Riise in Tuesday's semi-final, first leg 1-1 draw at home.
And the mission to overturn their first-leg 1-0 deficit was clouded somewhat with Albert Riera's attack on the club's management 24 hours before kick-off.
Toronto FC take a quick 2-0 lead at home in leg 1 against the LA Galaxy but have to settle for a 2-2 draw.
The nine-time European champions were held to a 1-1 home draw in the Bernabeu to go out 2-1 on aggregate to the French side, who won the first leg 1-0.
Leading 2-1 from the first leg Roma went 1-0 down early on but hit back with three goals, two from Mattia Destro and one from Vasilis Torosidis before Ricardo Alvarez grabbed a consolation for Inter.
United beat Arsenal 3-1 in the second leg and 4-1 on aggregate as the Champions League trophy again eluded Wenger and the London club.
After losing the first leg 3-1 at home on Feb. 19, Arsenal went ahead on Olivier Giroud's goal in the third minute.
Protecting a first-leg 3-1 lead, Inter were forced to play more than an hour a man short after Thiago Motta saw red for a hand-off on Sergio Busquets.
Trapattoni's side lost the first leg in Dublin 1-0 but were leading 1-0 in Paris before Henry handled the ball and squared for Gallas to nod in a goal that sent France to the 2010 World Cup finals in South Africa and left the Republic heartbroken.
"It is the most disappointing of nights, " Wenger told the Press Association as his side slipped to a 3-1 second leg defeat at the Emirates, losing the Champions League semifinal 4-1 on aggregate.
The club look certain to qualify for the first round proper after their 5-1 away leg win over Gretna on Thursday.
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Spurs added to their 2-1 first leg lead against Slavia when Jamie O'Hara fired in a deflected shot off Martin Latka.
Atletico take a 2-1 first leg lead to Sevilla on Wednesday night.
Adrian Mutu had a 30-yard effort saved late on and the teams will now meet in the second leg in Florence on 1 May.
Bridge will add to manager Avram Grant's defensive options after West Ham's only specialist left-back Herita Ilunga suffered a leg injury in the 1-1 draw with Everton on 28 December.
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Di Matteo faces a testing few weeks, with Chelsea hoping to overhaul a 3-1 first leg deficit to Napoli in their last 16 Champions League tie, an away trip to Birmingham in an FA Cup replay, while trying to improve their league position.
After the 1-1 second-leg draw, Drogba ran on to the pitch to confront Ovrebo at the final whistle and was booked.
One down from the first leg, Glentoran made it 1-1 on aggregate in first-half stoppage-time when Fitzgerald netted after a fine move.
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After doing the hard work with their 3-1 first-leg victory a week ago, Ebbsfleet were given an uncomfortable final half hour in this second leg.
Johnson, who broke his collarbone in the 3-1 first-leg win a week ago, was replaced by former Manchester United forward Erik Nevland who was deployed up front on his own.
The Milan midfielder will miss the Spurs game due to a four-match European for his headbutt on Spurs assistant boss Joe Jordan in the first leg which the Rossoneri lost 1-0.
Anyon won Vale's player-of-the-year-award in 2009 but broke his leg in the 2-1 defeat at Chesterfield in March of the same year and has been restricted to just seven starts this season.
But the late goal that Everton conceded in their 2-1 first-leg victory at Goodison Park has ultimately proved costly - ensuring as it did that Sporting approached the second leg with renewed optimism.
Bendtner scored twice in the opening half and capped off his performance by scoring a late penalty as Arsenal overturned a 2-1 first-leg deficit by hammering their opponents to earn a 6-2 victory on aggregate.
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The sides drew 1-1 in the first leg of their second qualifying round tie in Hungary.
The Dons, trailing 5-1 from the first leg, fell behind in the sixth minute when Tomas Janotka fired home.
Leading 3-1 from the first leg Lyon began well, but striker Bafetimbi Gomis headed over from point-blank range.
Juve will face either Napoli or Siena in the final -- they play on Wednesday with Napoli trailing 2-1 from the first leg.
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