Two were removed from service last week after the Boston fire and a separate fuel leak.
"Yes ... there appears to be a fuel leak from your left wing, " controllers said again.
Salvage teams are at the scene but there are no reports of any fuel leak or injuries.
Another different fuel leak was discovered on the same aircraft shortly afterwards before it returned to service.
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Another Japan Airlines' 787 in Boston had to scrap a takeoff on Tuesday due to a fuel leak.
Earlier Sunday night, a jack-knifed semi and subsequent fuel leak required a hazardous materials response outside Indianapolis, officials said.
At the weekend, the Japan Airlines (JAL) Dreamliner jet undergoing checks after a fuel leak at Boston Airport again leaked fuel.
Troubles dating back just four months include reports of an oil leak, a fuel leak, engine cracks and a damaged cockpit window.
Just this week one caught fire, and another suffered a fuel leak.
An inquiry into the crash of the Nimrod three years ago found that it was caused by a fuel leak and was "preventable".
Schlechter remembers a problem aboard his aircraft in 2004 when a passenger looking out a window spotted a minor fuel leak near the wing.
One plane had a cracked cockpit window, another had a fuel leak and a third plane made an emergency landing after a smoke alert went off.
Since July, the growing list of reported troubles aboard the planes include a fuel leak, an oil leak, two cracked engines, a damaged cockpit window and a battery problem.
His father told police there had been a fuel leak so the trunk liner, the spare tire, jack and tire iron had to be removed, Dannels told CNN in March.
Concerns centre on the possibility that the fuel-filled pebbles could leak, or that the graphite pebbles might catch fire.
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On Tuesday, the U.S. Coast Guard said the fire started with a leak in a fuel-oil return line running from one of the ship's engines.
On Tuesday, a Japan Airlines Boeing 787 readying for takeoff at Boston Logan International Airport sprang a leak from its main engine, spilling about 40 gallons of fuel onto the runway and causing safety workers to tow it back to the gate.
Ford recalled 709, 245 pickup trucks after it was discovered that a fuel line could come into contact with nearby components, wearing it through and causing a leak.
But Tepco said melting fuel rods had created a hole in the chamber, allowing 3, 000 tonnes of contaminated water to leak into the basement of the reactor building.
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