Last September hundreds of fish died in the Erewash Canal during a two-month fire at the centre in Stanton-by-Dale.
Following the breach, the trust rescued thousands of fish from the stretch of canal after it dried up in October.
Hundreds of fish died in a nearby Erewash Canal after oxygen levels in the water dropped dramatically.
Run-off water from the fire-fighting operation reduced oxygen levels in the canal, causing the fish to die.
The Environment Agency had to reintroduce oxygen in the canal to prevent more fish from dying due to the contaminated water.
About 60, 000 fish have been rescued from a Cheshire canal after a huge section of the bank collapsed.
The Canal and River Trust said the fish, including roach, perch and bream, will be stunned with an electric pulse, before they are taken to Erewash Canal.
The trust added that high levels of fish live at Caen Hill lock on the Kennet and Avon Canal, so management is required to keep an ecological balance.
Hundreds of fish are to be removed from part of the Kennet and Avon Canal for repairs to be carried out.
The replacement fish are being driven up from part of the Kennet and Avon Canal, while lock repairs are being carried out on the Bath Flight.
The fish will be stunned with an electric pulse, netted and re-homed on another section of the canal.
The fish, which included bream, roach and some eels, were released safely in another part of the canal.
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