Boisselier said that, although she disagrees, she is reluctant to challenge the agency in court.
Boisselier, a French biochemist, said she hopes to clone a human being within a year.
Boisselier said 50 members of the movement have volunteered to carry the clone of a dead 10-month-old boy.
Boisselier said she wants to prove it is safe to clone a human.
Boisselier in particular could face tough questions from the subcommittee: The Raelians believe life on Earth was created through genetic engineering by extraterrestrials.
The FDA visit was made about two weeks after Boisselier argued before Congress that her company should be allowed to pursue human cloning, she said.
Boisselier told CNN she has not been served with any subpoenas.
Although the FDA may know the company's whereabouts, Boisselier would not say where her lab is based nor how close it is to cloning a human.
Investigators from the FDA arrived at Clonaid's lab in the spring, a few weeks after Boisselier testified before Congress that human cloning could be done safely, she said.
One of these women is Boisselier's daughter, Marina Cocolios, 24.
U.S. News and World Report will report in next week's issue that a federal grand jury in Syracuse, New York, near Boisselier's home, has subpoenaed her phone records and other documents.
This week, the controversial couple, together with Brigitte Boisselier, the head of Clonaid, the cloning arm of the Raelians (a slightly weird sect), repeated the trick for the cameras at America's National Academy of Sciences.
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