Fulham striker Bobby Zamora sent a deflected shot just wide as the hosts continued to press.
The superb Bobby Zamora met Bjorn Helge Riise's cross with an assured finish to open the scoring.
The Hammers went up courtesy of the only goal of the game from Bobby Zamora after 57 minutes.
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Fulham were the better side throughout and were 2-0 up at half-time, courtesy of Bobby Zamora's superb finish.
Fulham lost Bobby Zamora to injury but his team-mates coped well and Gera lost his balance when through on goal.
After a drab first half, Bobby Zamora curled in from 20 yards just before the hour to give the home side the lead.
England are light on strikers for the France friendly, with Darren Bent, Bobby Zamora, Jermain Defoe and Wayne Rooney having all been ruled out.
Even so, his case has undoubtedly been helped by the absence through injury of fellow strikers Wayne Rooney, Darren Bent, Jermain Defoe and Bobby Zamora.
Fulham snatched a 1-0 win at cash-strapped Portsmouth thanks to a lucky goal from Bobby Zamora after Clint Dempsey's shot deflected in off the striker's back.
Bobby Zamora somehow scuffed wide a superbly-worked set-piece shortly after the half-hour mark, while Harewood forced Alec Chamberlain into a fine reflex save from close range.
Clint Dempsey made it two from 20-yards out in the second half and Bobby Zamora put Fulham in control with a shot into the right hand corner.
Quick thinking by Yossi Benayoun from a short corner freed up Etherington, whose driven shot deflected just wide of both the lunging Bobby Zamora and the far post.
The Cottagers took 21 seconds to make amends for Wolfsburg's late goal in the first leg as Bobby Zamora neatly turned Jan Simunek and slotted his side ahead.
He was then involved in the challenge which broke the leg of Fulham striker Bobby Zamora on 11 September, although he was exonerated of any blame for the injury.
The visitors had the game's first opening when Bobby Zamora found space on the left and, ignoring well-placed team-mates to his right, curled a shot well wide of the post.
Johnson's injury will be a headache for Fulham manager Roy Hodgson, who opted to field the striker alongside Bobby Zamora in an unchanged line-up from Saturday's league win over Portsmouth.
Despite record-signing Ashton taking his place on the West Ham bench, the powerful front two pairing of Bobby Zamora and Marlon Harewood continued to cause problems to the Arsenal back-line.
West Ham took the lead in injury time, the home defence failing to deal with Green's long punt down field and, after exchanging passes with Bobby Zamora, Tevez squeezed his shot home.
Fulham, who were without striker Bobby Zamora, had failed to clear Gower's corner before Wayne Routledge's miscued ball fell to Sinclair and his seemingly innocuous effort was turned in by Fulham's top scorer.
Suddenly the Cottagers were rampant and they went close to levelling soon after, when Alex Manninger clawed away a Brede Hangeland header, then threatened again with shots from Zoltan Gera and Bobby Zamora.
Striker Bobby Zamora, meanwhile, has scored six Europa League goals this season, but faces a battle to be fit for the final after an ongoing Achilles problem prompted his substitution after 57 minutes.
The Cottagers had a level of control over the game and Bobby Zamora set up Dempsey at the far post but his shot was blocked by Ian Ashbee with keeper Duke out of position.
It was a match where the result outweighed the manner of performance with Fulham manager Roy Hodgson travelling to eastern Europe without Danny Murphy, Bobby Zamora and Paul Konchesky, as well as striker Andy Johnson.
Manager Ian Holloway's newly-promoted Tangerines looked on course for a momentous three points as they came from behind after Bobby Zamora - watched by England coach Fabio Capello - headed Fulham into a first-half lead.
The Wolves skipper, who has made 182 appearances for the club, was also sorry for the damage done to Fulham striker Bobby Zamora, who broke his leg during a challenge between the two players in September.
Right from the start, Chelsea looked off key and when skipper John Terry failed to head away Paul Konchesky's cross, Gera was on hand to hook the ball in after Bobby Zamora had nodded it his way.
Davies' inclusion owes much to injuries to Tottenham striker Jermain Defore, Fulham's Bobby Zamora and Aston Villa forward Gabriel Agbonlahor while Capello has also overlooked Newcastle United's Andy Carroll who had been tipped for a call up.
Two players Flores no doubt hopes do not feature on Wednesday are Fulham striker Bobby Zamora, who faces a race against time to overcome an Achilles tendon problem, and winger Duff, who is recovering from a leg injury.
Fulham's Bobby Zamora and West Ham's Carlton Cole both missed out on a striking berth, with Sunderland's 25-goal frontman Bent, Peter Crouch and Jermain Defoe of Spurs joining Villa's Emile Heskey and prolific Manchester United forward Wayne Rooney.
But with Andy Johnson, Bobby Zamora, Erik Nevland and David Elm ahead of him in the pecking order at the Premier League club, he has opted to move to Glasgow for regular football with a manager he knows well.
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