An Anglian Water spokeswoman apologised and said the burst should be fixed later this week.
Anglian Water apologised to the clubs and said their pumping operations should be complete by the weekend.
He also said the flooding could have been avoided if Anglian Water had consulted the clubs earlier.
Lincolnshire County Council said the problem with Anglian Water's plant in Ingoldmells had gone on too long.
Anglian Water said it wanted to provide a solution to the problem too.
Anglian Water has also written to GPs and hospitals asking them to be vigilant for signs and symptoms of cryptosporidiosis.
Anglian Water advises customers with worries about their health to contact their GP or call NHS Direct on 0845 4647.
She said the council also needs to assist Anglian Water in an advisory capacity to help it solve the problem.
Anglian Water, which has already spent hundreds of thousands of pounds trying to solve the issue, pledged to find a solution.
Anglian Water, which supplies four of the six customers who have switched, says that it is seeking dozens of new customers.
Anglian Water said the work was due to be completed by Easter.
The endangered rodents were thought to be in the area after staff at the Anglian Water site discovered a nibbled hazelnut last summer.
He said there had been a massive rise in housing and tourism over the years, but there had been no investment by Anglian Water.
The DWI said the water became contaminated after the Anglian Water centre did not respond quickly to internal alarms signalling a water tower was emptying.
Anglian water has apologised for the inconvenience of the current situation but said the water was safe to drink if it was boiled and cooled beforehand.
The tower in Colchester, Essex, is called Jumbo and has had several owners since it was decommissioned in the 1980s and sold off by Anglian Water.
Colin Davie, from Lincolnshire County Council, said the authority would be prepared to prosecute Anglian Water under enforcement regulations if it did not find a solution soon.
The project, hosted by Lincolnshire County Council, brings together The Environment Agency, Lincolnshire Wolds Countryside Service, Natural England, Lincolnshire Wildlife Trust, Anglian Water and the Wild Trout Trust.
East Lindsey District Council said the odour diaries would help determine if an Anglian Water sewage plant is to blame, and potentially help the council to take legal action.
Anglian Water has been granted permission to pump up to 17 million litres a day until next March into its Pitsford Reservoir, which supplies around 600, 000 customers in the Northampton area.
AWG, formerly Anglian Water, has ring-fenced its water business.
An advice and response unit is being set up in Northampton's central Market Square where Anglian Water experts and customer service staff will be available to answer any concerns of residents, she said.
"Without the high increases in complaints to Southern Water, Anglian Water and South East Water, figures for the industry overall would have dropped, " said Dame Yve Buckland, chairperson of the Consumer Council for Water.
Next Saturday the flame visits the Suffolk Spartans Powerlifting Club at East Bergholt Sports Centre, the East Anglian Sailing Trust at Levington Marina and the Water Lane Sports Centre in Lowestoft.
Now ok, the water won't come from Welsh reservoirs - rather from boreholes beneath Birmingham - but, so the argument goes, without the Welsh water, they wouldn't have 30 million litres a day to spare for Anglian.
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