The minister said he appreciated Mr Donaghy's "agreement to pass the baton to the new team".
The health minister said he wished Mr Donaghy well in his "important" new role.
Sean Donaghy will take up a new post with the Health and Social Care Board.
Stern said league officials observed no inappropriate behavior by Donaghy the last two seasons.
Mr Donaghy's body was photographed at the Army post with nailbombs in his pockets.
BBC: NEWS | UK | Northern Ireland | Soldier 'took body in car'
Mr Donaghy said the health trust was taking any feedback from patients very seriously.
It's much more likely that Donaghy's betting buddies wagered illegally somewhere else, not legally in Nevada.
It is believed that Soldier A or his colleague, Soldier B, must have shot Mr Donaghy.
Keeper James Donaghy got a stick to it but could not complete a save.
BBC: Aidan Delargy is closed down by Liam Hinphey and Mark Craig
In January 2005, Stern said the NBA investigated a dispute between Donaghy and a West Chester, Pa.
Mr Donaghy said the problems relate back to the closure of the Whiteabbey and Mid Ulster hospitals.
The ref in question, Tim Donaghy, is being investigated for betting on league games, including some he officiated.
Mr Donaghy was walking on the Beltany Road, Newtownstewart, when the collision happened at about 23:00 BST on Friday.
BBC: Road victim named as young GAA footballer Cathal Donaghy
During the investigation, there were allegations that Donaghy was gambling - not on sports - in Atlantic City, N.
If you ever wanted to know how to dress for the job, I recommend taking advice from Jack Donaghy.
Donaghy has already resigned from the league and is reportedly cooperating with investigators.
Conway's agent, Mark Donaghy, held talks with Rangers last week but no offer was made by the Ibrox club.
Mr Donaghy was one of three people who lost their lives in road crashes in Northern Ireland over the weekend.
BBC: Road victim named as young GAA footballer Cathal Donaghy
To ask Rita Donaghy a question about how to best cope with any staff disputes, use the e-mail form below.
For years Baldwin has been talking about ending his run on 30 Rock as the awesome executive Jack Donaghy.
FORBES: Sorry, Charlie: Ashton Kutcher Tops Our List Of The Highest-Paid TV Actors
Lockhart has failed to recover from a hamstring injury while another injury doubt Gavin Donaghy is also included in the substitutes.
Stern said the league contacted every casino in Atlantic City and Las Vegas and found no evidence Donaghy was involved in gambling.
Stern also said Donaghy is accused of providing information to other gamblers.
Mr Donaghy has worked in the National Health Service for 30 years and was appointed to the trust's top job in September 2010.
Derry man Damien Donaghy was shot in the leg about 15 minutes before the Parachute Regiment moved into the Bogside area of Derry.
The teenager who died after he was hit by a car in Newtownstewart, County Tyrone, on Friday night has been named locally as Cathal Donaghy.
BBC: Road victim named as young GAA footballer Cathal Donaghy
The FBI is investigating former referee Tim Donaghy for allegedly betting on games perhaps including those he officiated during the last two seasons.
"Mr. Donaghy is the only referee alleged to have bet on NBA games and disclosed confidential information to others, " Stern said at a news conference.
But it was not the first time Donaghy faced gambling allegations.
Their comeback album, Angels With Dirty Faces, helped Keisha Buchanan, Mutya Buena and Donaghy's replacement Heidi Range win the best dance act Brit award last month.
应用推荐